Welcome to Nellie

Nellie is a tool for automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy.

Features

• Segmentation: Automated segmentation of organelles.
• Tracking: Tracking of organelles over time.
• Feature Extraction: Hierarchical feature extraction.
• Napari Plugin: Integration with Napari for visualization.

Installation

pip install nellie

Usage

See the API Reference for detailed usage information.